J3_8UQM_030

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8UQM|1|a|A|504, 8UQM|1|a|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UQM_030 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1051

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8UQM|1|a|G|30
8UQM|1|a|C|31
*
8UQM|1|a|G|474
8UQM|1|a|C|475
8UQM|1|a|G|476
8UQM|1|a|A|477
8UQM|1|a|A|478
8UQM|1|a|A|479
8UQM|1|a|A|480
8UQM|1|a|G|481
8UQM|1|a|A|482
8UQM|1|a|A|483
8UQM|1|a|C|484
*
8UQM|1|a|G|496
8UQM|1|a|A|497
8UQM|1|a|G|498
8UQM|1|a|U|499
8UQM|1|a|G|500
8UQM|1|a|A|501
8UQM|1|a|A|502
8UQM|1|a|A|503
8UQM|1|a|A|504
8UQM|1|a|A|505
8UQM|1|a|G|506
8UQM|1|a|A|507
8UQM|1|a|A|508
8UQM|1|a|C|509
8UQM|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24

Chain z

50S ribosomal protein L20