J3_8UR0_001
3D structure
- PDB id
- 8UR0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 8UR0|1|D|U|871, 8UR0|1|D|A|873
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UR0_001 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.0692
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8UR0|1|D|C|826
8UR0|1|D|U|827
8UR0|1|D|U|828
8UR0|1|D|G|829
*
8UR0|1|D|C|857
8UR0|1|D|G|858
8UR0|1|D|G|859
8UR0|1|D|A|860
8UR0|1|D|G|861
*
8UR0|1|D|C|868
8UR0|1|D|G|869
8UR0|1|D|U|870
8UR0|1|D|U|871
8UR0|1|D|A|872
8UR0|1|D|A|873
8UR0|1|D|G|874
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S21
- Chain G
- 30S ribosomal protein S2
- Chain N
- 30S ribosomal protein S8
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