J3_8UR0_009
3D structure
- PDB id
- 8UR0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 8UR0|1|D|U|1240, 8UR0|1|D|C|1302
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UR0_009 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1228
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
8UR0|1|D|C|1237
8UR0|1|D|A|1238
8UR0|1|D|A|1239
8UR0|1|D|U|1240
8UR0|1|D|G|1241
*
8UR0|1|D|C|1296
8UR0|1|D|G|1297
8UR0|1|D|U|1298
8UR0|1|D|A|1299
8UR0|1|D|G|1300
8UR0|1|D|U|1301
8UR0|1|D|C|1302
8UR0|1|D|C|1303
*
8UR0|1|D|G|1334
8UR0|1|D|U|1335
8UR0|1|D|C|1336
8UR0|1|D|G|1337
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain M
- 30S ribosomal protein S7
- Chain X
- 30S ribosomal protein S13
Coloring options: