J3_8URI_013

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8URI_013 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0609

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8URI|1|a|C|1298
8URI|1|a|G|1299
8URI|1|a|G|1300
8URI|1|a|A|1301
8URI|1|a|A|1302
8URI|1|a|G|1303
*
8URI|1|a|C|1625
8URI|1|a|A|1626
8URI|1|a|G|1627
*
8URI|1|a|C|1639
8URI|1|a|A|1640
8URI|1|a|A|1641
8URI|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains