3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
AUCA*UAACUACUG*CAUUU
Length
18 nucleotides
Bulged bases
8UT0|1|2|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UT0_007 not in the Motif Atlas
Homologous match to J3_8P9A_074
Geometric discrepancy: 0.0938
The information below is about J3_8P9A_074
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76375.1
Basepair signature
cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
Number of instances in this motif group
1

Unit IDs

8UT0|1|2|A|881
8UT0|1|2|U|882
8UT0|1|2|C|883
8UT0|1|2|A|884
*
8UT0|1|2|U|928
8UT0|1|2|A|929
8UT0|1|2|A|930
8UT0|1|2|C|931
8UT0|1|2|U|932
8UT0|1|2|A|933
8UT0|1|2|C|934
8UT0|1|2|U|935
8UT0|1|2|G|936
*
8UT0|1|2|C|943
8UT0|1|2|A|944
8UT0|1|2|U|945
8UT0|1|2|U|946
8UT0|1|2|U|947

Current chains

Chain 2
18S rRNA

Nearby chains

Chain Lr
60S ribosomal protein L43-A
Chain SQ
40S ribosomal protein S1-A
Chain SY
40S ribosomal protein S13
Chain SZ
40S ribosomal protein S14-B
Chain Se
40S ribosomal protein S26-B

Coloring options:


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