J3_8UT0_012

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8UT0|1|2|A|1217, 8UT0|1|2|G|1445, 8UT0|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UT0_012 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1521

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8UT0|1|2|C|1215
8UT0|1|2|C|1216
8UT0|1|2|A|1217
8UT0|1|2|G|1218
8UT0|1|2|A|1219
8UT0|1|2|C|1220
*
8UT0|1|2|G|1263
8UT0|1|2|G|1264
8UT0|1|2|G|1265
8UT0|1|2|U|1266
8UT0|1|2|G|1267
*
8UT0|1|2|U|1442
8UT0|1|2|U|1443
8UT0|1|2|A|1444
8UT0|1|2|G|1445
8UT0|1|2|A|1446
8UT0|1|2|C|1447
8UT0|1|2|G|1448

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S10-A

Chain SM

40S ribosomal protein S29-A

Chain SN

40S ribosomal protein S31