J3_8UT0_020
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 8UT0|1|A|U|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UT0_020 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.1023
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75408.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8UT0|1|A|C|185
8UT0|1|A|U|186
8UT0|1|A|A|187
8UT0|1|A|U|188
8UT0|1|A|G|189
*
8UT0|1|A|C|205
8UT0|1|A|G|206
8UT0|1|A|U|207
8UT0|1|A|C|208
8UT0|1|A|A|209
8UT0|1|A|U|210
8UT0|1|A|A|211
8UT0|1|A|G|212
8UT0|1|A|A|213
8UT0|1|A|G|214
*
8UT0|1|A|C|226
8UT0|1|A|G|227
8UT0|1|A|U|228
8UT0|1|A|G|229
8UT0|1|A|U|230
8UT0|1|A|G|231
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- 60S ribosomal protein L4-A
- Chain La
- 60S ribosomal protein L26-A
Coloring options: