3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
UGAACUA*UAG*CGAA
Length
14 nucleotides
Bulged bases
8UT0|1|A|A|817, 8UT0|1|A|G|924, 8UT0|1|A|A|925
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UT0_025 not in the Motif Atlas
Homologous match to J3_8C3A_003
Geometric discrepancy: 0.0691
The information below is about J3_8C3A_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.5
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

8UT0|1|A|U|814
8UT0|1|A|G|815
8UT0|1|A|A|816
8UT0|1|A|A|817
8UT0|1|A|C|818
8UT0|1|A|U|819
8UT0|1|A|A|820
*
8UT0|1|A|U|905
8UT0|1|A|A|906
8UT0|1|A|G|907
*
8UT0|1|A|C|923
8UT0|1|A|G|924
8UT0|1|A|A|925
8UT0|1|A|A|926

Current chains

Chain A
25S rRNA

Nearby chains

Chain LD
60S ribosomal protein L2-A
Chain LP
60S ribosomal protein L15-A
Chain Ll
60S ribosomal protein L37-A
Chain Ln
60S ribosomal protein L39
Chain z
Cytoplasmic 60S subunit biogenesis factor REH1 (N-terminal 3xFLAG tag)

Coloring options:


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