J3_8V83_006
3D structure
- PDB id
- 8V83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 8V83|1|1|U|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8V83_006 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.0862
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75408.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8V83|1|1|C|185
8V83|1|1|U|186
8V83|1|1|A|187
8V83|1|1|U|188
8V83|1|1|G|189
*
8V83|1|1|C|205
8V83|1|1|G|206
8V83|1|1|U|207
8V83|1|1|C|208
8V83|1|1|A|209
8V83|1|1|U|210
8V83|1|1|A|211
8V83|1|1|G|212
8V83|1|1|A|213
8V83|1|1|G|214
*
8V83|1|1|C|226
8V83|1|1|G|227
8V83|1|1|U|228
8V83|1|1|G|229
8V83|1|1|U|230
8V83|1|1|G|231
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain I
- Ribosome biogenesis protein NSA1
- Chain Y
- 60S ribosomal protein L26-A
- Chain v
- Nucleolar protein 16
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