J3_8VFT_012

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

8VFT|1|5|U|2788, 8VFT|1|5|A|2789

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VFT_012 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.1008

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8VFT|1|5|G|2402
8VFT|1|5|A|2403
8VFT|1|5|A|2404
8VFT|1|5|G|2405
*
8VFT|1|5|C|2785
8VFT|1|5|C|2786
8VFT|1|5|A2M|2787
8VFT|1|5|U|2788
8VFT|1|5|A|2789
8VFT|1|5|U|2790
8VFT|1|5|C|2791
*
8VFT|1|5|G|2800
8VFT|1|5|U|2801
8VFT|1|5|C|2802

Current chains

Chain 5

28S rRNA

Nearby chains

Chain g

eL34

Chain j

eL37

Chain l

eL39