J3_8VFT_022

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8VFT|1|5|A|4464, 8VFT|1|5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VFT_022 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.1271

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

8VFT|1|5|U|4463
8VFT|1|5|A|4464
8VFT|1|5|U|4465
8VFT|1|5|C|4466
*
8VFT|1|5|G|4491
8VFT|1|5|U|4492
8VFT|1|5|U|4493
*
8VFT|1|5|A|4507
8VFT|1|5|C|4508
8VFT|1|5|U|4509
8VFT|1|5|A|4510
8VFT|1|5|A|4511
8VFT|1|5|U|4512
8VFT|1|5|A|4513

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain V

uL14