J3_8VK7_011

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CGAAAG*CAG*UAAG

Length

13 nucleotides

Bulged bases

8VK7|1|A|A|1417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VK7_011 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1087

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8VK7|1|A|C|1413
8VK7|1|A|G|1414
8VK7|1|A|A|1415
8VK7|1|A|A|1416
8VK7|1|A|A|1417
8VK7|1|A|G|1418
*
8VK7|1|A|C|1843
8VK7|1|A|A|1844
8VK7|1|A|G|1845
*
8VK7|1|A|U|1857
8VK7|1|A|A|1858
8VK7|1|A|A|1859
8VK7|1|A|G|1860

Current chains

Chain A

23S ribosomal RNA

Nearby chains