J3_8VKV_002

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8VKV|1|D|C|48, 8VKV|1|D|A|51

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VKV_002 not in the Motif Atlas

Geometric match to J3_5J7L_050

Geometric discrepancy: 0.063

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8VKV|1|D|G|46
8VKV|1|D|C|47
8VKV|1|D|C|48
8VKV|1|D|U|49
8VKV|1|D|A|50
8VKV|1|D|A|51
8VKV|1|D|C|52
*
8VKV|1|D|G|359
8VKV|1|D|G|360
8VKV|1|D|G|361
8VKV|1|D|G|362
8VKV|1|D|A|363
8VKV|1|D|A|364
8VKV|1|D|U|365
8VKV|1|D|A|366
8VKV|1|D|U|367
*
8VKV|1|D|A|393
8VKV|1|D|G|394
8VKV|1|D|C|395

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

30S ribosomal protein S16