J3_8VKV_016

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8VKV|1|D|U|1240, 8VKV|1|D|C|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VKV_016 not in the Motif Atlas

Geometric match to J3_4LFB_009

Geometric discrepancy: 0.1228

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8VKV|1|D|C|1237
8VKV|1|D|A|1238
8VKV|1|D|A|1239
8VKV|1|D|U|1240
8VKV|1|D|G|1241
*
8VKV|1|D|C|1296
8VKV|1|D|G|1297
8VKV|1|D|U|1298
8VKV|1|D|A|1299
8VKV|1|D|G|1300
8VKV|1|D|U|1301
8VKV|1|D|C|1302
8VKV|1|D|C|1303
*
8VKV|1|D|G|1334
8VKV|1|D|U|1335
8VKV|1|D|C|1336
8VKV|1|D|G|1337

Current chains

Chain D

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S7

Chain X

30S ribosomal protein S13