J3_8VKV_025

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

8VKV|1|a|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VKV_025 not in the Motif Atlas

Geometric match to J3_5J7L_041

Geometric discrepancy: 0.0651

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8VKV|1|a|C|1298
8VKV|1|a|G|1299
8VKV|1|a|G|1300
8VKV|1|a|A|1301
8VKV|1|a|A|1302
8VKV|1|a|G|1303
*
8VKV|1|a|C|1625
8VKV|1|a|A|1626
8VKV|1|a|G|1627
*
8VKV|1|a|C|1639
8VKV|1|a|A|1640
8VKV|1|a|A|1641
8VKV|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains