J3_8VOP_002

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8VOP|1|D|C|48, 8VOP|1|D|A|51

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOP_002 not in the Motif Atlas

Geometric match to J3_5J7L_050

Geometric discrepancy: 0.0562

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8VOP|1|D|G|46
8VOP|1|D|C|47
8VOP|1|D|C|48
8VOP|1|D|U|49
8VOP|1|D|A|50
8VOP|1|D|A|51
8VOP|1|D|C|52
*
8VOP|1|D|G|359
8VOP|1|D|G|360
8VOP|1|D|G|361
8VOP|1|D|G|362
8VOP|1|D|A|363
8VOP|1|D|A|364
8VOP|1|D|U|365
8VOP|1|D|A|366
8VOP|1|D|U|367
*
8VOP|1|D|A|393
8VOP|1|D|G|394
8VOP|1|D|C|395

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

30S ribosomal protein S16