J3_8VOP_006

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8VOP|1|D|U|871, 8VOP|1|D|A|873

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOP_006 not in the Motif Atlas

Geometric match to J3_5J7L_004

Geometric discrepancy: 0.077

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8VOP|1|D|C|826
8VOP|1|D|U|827
8VOP|1|D|U|828
8VOP|1|D|G|829
*
8VOP|1|D|C|857
8VOP|1|D|G|858
8VOP|1|D|G|859
8VOP|1|D|A|860
8VOP|1|D|G|861
*
8VOP|1|D|C|868
8VOP|1|D|G|869
8VOP|1|D|U|870
8VOP|1|D|U|871
8VOP|1|D|A|872
8VOP|1|D|A|873
8VOP|1|D|G|874

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain G

30S ribosomal protein S2

Chain N

30S ribosomal protein S8