J3_8VOP_026

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8VOP|1|a|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOP_026 not in the Motif Atlas

Geometric match to J3_7A0S_007

Geometric discrepancy: 0.111

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8VOP|1|a|C|1306
8VOP|1|a|A|1307
8VOP|1|a|A|1308
8VOP|1|a|G|1309
*
8VOP|1|a|C|1605
8VOP|1|a|C|1606
8VOP|1|a|C|1607
8VOP|1|a|A|1608
8VOP|1|a|A|1609
8VOP|1|a|A|1610
8VOP|1|a|C|1611
*
8VOP|1|a|G|1620
8VOP|1|a|U|1621
8VOP|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34