J3_8VOR_002

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8VOR|1|D|C|48, 8VOR|1|D|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOR_002 not in the Motif Atlas

Geometric match to J3_5J7L_050

Geometric discrepancy: 0.0562

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8VOR|1|D|G|46
8VOR|1|D|C|47
8VOR|1|D|C|48
8VOR|1|D|U|49
8VOR|1|D|A|50
8VOR|1|D|A|51
8VOR|1|D|C|52
*
8VOR|1|D|G|359
8VOR|1|D|G|360
8VOR|1|D|G|361
8VOR|1|D|G|362
8VOR|1|D|A|363
8VOR|1|D|A|364
8VOR|1|D|U|365
8VOR|1|D|A|366
8VOR|1|D|U|367
*
8VOR|1|D|A|393
8VOR|1|D|G|394
8VOR|1|D|C|395

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

30S ribosomal protein S16