J3_8VOR_006

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8VOR|1|D|U|871, 8VOR|1|D|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOR_006 not in the Motif Atlas

Geometric match to J3_5J7L_004

Geometric discrepancy: 0.077

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8VOR|1|D|C|826
8VOR|1|D|U|827
8VOR|1|D|U|828
8VOR|1|D|G|829
*
8VOR|1|D|C|857
8VOR|1|D|G|858
8VOR|1|D|G|859
8VOR|1|D|A|860
8VOR|1|D|G|861
*
8VOR|1|D|C|868
8VOR|1|D|G|869
8VOR|1|D|U|870
8VOR|1|D|U|871
8VOR|1|D|A|872
8VOR|1|D|A|873
8VOR|1|D|G|874

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain G

30S ribosomal protein S2

Chain N

30S ribosomal protein S8