J3_8VOR_016

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8VOR|1|D|U|1240, 8VOR|1|D|C|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOR_016 not in the Motif Atlas

Geometric match to J3_4LFB_009

Geometric discrepancy: 0.1208

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8VOR|1|D|C|1237
8VOR|1|D|A|1238
8VOR|1|D|A|1239
8VOR|1|D|U|1240
8VOR|1|D|G|1241
*
8VOR|1|D|C|1296
8VOR|1|D|G|1297
8VOR|1|D|U|1298
8VOR|1|D|A|1299
8VOR|1|D|G|1300
8VOR|1|D|U|1301
8VOR|1|D|C|1302
8VOR|1|D|C|1303
*
8VOR|1|D|G|1334
8VOR|1|D|U|1335
8VOR|1|D|C|1336
8VOR|1|D|G|1337

Current chains

Chain D

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S7

Chain X

30S ribosomal protein S13