J3_8VOR_028

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOR_028 not in the Motif Atlas

Geometric match to J3_5J7L_069

Geometric discrepancy: 0.0554

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8VOR|1|a|G|1424
8VOR|1|a|G|1425
8VOR|1|a|G|1426
8VOR|1|a|A|1427
8VOR|1|a|C|1428
8VOR|1|a|G|1429
*
8VOR|1|a|C|1564
8VOR|1|a|C|1565
*
8VOR|1|a|G|1568
8VOR|1|a|A|1569
8VOR|1|a|A|1570
8VOR|1|a|A|1571
8VOR|1|a|A|1572
8VOR|1|a|G|1573
8VOR|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2