J3_8VS9_001

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8VS9|1|16S|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VS9_001 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1223

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8VS9|1|16S|C|826
8VS9|1|16S|U|827
8VS9|1|16S|U|828
8VS9|1|16S|G|829
*
8VS9|1|16S|C|857
8VS9|1|16S|G|858
8VS9|1|16S|G|859
8VS9|1|16S|A|860
8VS9|1|16S|G|861
*
8VS9|1|16S|C|868
8VS9|1|16S|G|869
8VS9|1|16S|U|870
8VS9|1|16S|U|871
8VS9|1|16S|A|872
8VS9|1|16S|A|873
8VS9|1|16S|G|874

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S02

30S ribosomal protein S2

Chain S08

30S ribosomal protein S8

Chain S21

30S ribosomal protein S21