3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
8VS9|1|16S|U|1240, 8VS9|1|16S|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8VS9_008 not in the Motif Atlas
Homologous match to J3_5J7L_011
Geometric discrepancy: 0.3104
The information below is about J3_5J7L_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

8VS9|1|16S|C|1237
8VS9|1|16S|A|1238
8VS9|1|16S|A|1239
8VS9|1|16S|U|1240
8VS9|1|16S|G|1241
*
8VS9|1|16S|C|1296
8VS9|1|16S|G|1297
8VS9|1|16S|U|1298
8VS9|1|16S|A|1299
8VS9|1|16S|G|1300
8VS9|1|16S|U|1301
8VS9|1|16S|C|1302
8VS9|1|16S|C|1303
*
8VS9|1|16S|G|1334
8VS9|1|16S|U|1335
8VS9|1|16S|C|1336
8VS9|1|16S|G|1337

Current chains

Chain 16S
16S ribosomal RNA

Nearby chains

Chain S07
30S ribosomal protein S7
Chain S13
30S ribosomal protein S13

Coloring options:


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