J3_8VS9_012

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VS9_012 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1499

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8VS9|1|23S|C|1298
8VS9|1|23S|G|1299
8VS9|1|23S|G|1300
8VS9|1|23S|A|1301
8VS9|1|23S|A|1302
8VS9|1|23S|G|1303
*
8VS9|1|23S|C|1625
8VS9|1|23S|A|1626
8VS9|1|23S|G|1627
*
8VS9|1|23S|C|1639
8VS9|1|23S|A|1640
8VS9|1|23S|A|1641
8VS9|1|23S|G|1642

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains