J3_8VS9_020

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8VS9|1|16S|C|48, 8VS9|1|16S|A|50, 8VS9|1|16S|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VS9_020 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.1173

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8VS9|1|16S|G|46
8VS9|1|16S|C|47
8VS9|1|16S|C|48
8VS9|1|16S|U|49
8VS9|1|16S|A|50
8VS9|1|16S|A|51
8VS9|1|16S|C|52
*
8VS9|1|16S|G|359
8VS9|1|16S|G|360
8VS9|1|16S|G|361
8VS9|1|16S|G|362
8VS9|1|16S|A|363
8VS9|1|16S|A|364
8VS9|1|16S|U|365
8VS9|1|16S|A|366
8VS9|1|16S|U|367
*
8VS9|1|16S|A|393
8VS9|1|16S|G|394
8VS9|1|16S|C|395

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S12

30S ribosomal protein S12

Chain S16

30S ribosomal protein S16