J3_8VVQ_013
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVQ_013 not in the Motif Atlas
- Geometric match to J3_8P9A_055
- Geometric discrepancy: 0.1399
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8VVQ|1|WA|U|2442
8VVQ|1|WA|C|2443
8VVQ|1|WA|G|2444
8VVQ|1|WA|G|2445
8VVQ|1|WA|U|2446
8VVQ|1|WA|C|2447
*
8VVQ|1|WA|G|2517
8VVQ|1|WA|G|2518
8VVQ|1|WA|A|2519
8VVQ|1|WA|G|2520
8VVQ|1|WA|U|2521
*
8VVQ|1|WA|A|2538
8VVQ|1|WA|A|2539
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain FA
- L34
- Chain JA
- eL38
- Chain KA
- eL39
- Chain W
- uL23
- Chain YA
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: