J3_8VVQ_035
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 8VVQ|1|ZA|G|1256, 8VVQ|1|ZA|A|1258, 8VVQ|1|ZA|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVQ_035 not in the Motif Atlas
- Geometric match to J3_8CRE_080
- Geometric discrepancy: 0.0786
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VVQ|1|ZA|C|1237
8VVQ|1|ZA|U|1238
8VVQ|1|ZA|U|1239
8VVQ|1|ZA|A|1240
8VVQ|1|ZA|A|1241
8VVQ|1|ZA|U|1242
8VVQ|1|ZA|U|1243
8VVQ|1|ZA|U|1244
*
8VVQ|1|ZA|G|1255
8VVQ|1|ZA|G|1256
8VVQ|1|ZA|G|1257
8VVQ|1|ZA|A|1258
8VVQ|1|ZA|A|1259
8VVQ|1|ZA|A|1260
8VVQ|1|ZA|C|1261
8VVQ|1|ZA|C|1262
8VVQ|1|ZA|U|1263
8VVQ|1|ZA|C|1264
8VVQ|1|ZA|A|1265
8VVQ|1|ZA|C|1266
*
8VVQ|1|ZA|G|1516
8VVQ|1|ZA|G|1517
8VVQ|1|ZA|C|1518
8VVQ|1|ZA|U|1519
8VVQ|1|ZA|G|1520
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain DC
- uS14
- Chain PB
- S15
- Chain SB
- S18
- Chain UA
- Transfer RNA; tRNA
- Chain UB
- uS10
Coloring options: