J3_8VVT_011
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 8VVT|1|WA|A|2401, 8VVT|1|WA|U|2403
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVT_011 not in the Motif Atlas
- Geometric match to J3_8CRE_013
- Geometric discrepancy: 0.107
- The information below is about J3_8CRE_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19545.2
- Basepair signature
- cWW-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
8VVT|1|WA|C|2398
8VVT|1|WA|G|2399
8VVT|1|WA|A|2400
8VVT|1|WA|A|2401
8VVT|1|WA|G|2402
8VVT|1|WA|U|2403
8VVT|1|WA|G|2404
*
8VVT|1|WA|C|2810
8VVT|1|WA|A|2811
8VVT|1|WA|A|2812
*
8VVT|1|WA|U|2824
8VVT|1|WA|C|2825
8VVT|1|WA|U|2826
8VVT|1|WA|G|2827
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain FA
- eL34
- Chain Q
- eL19
Coloring options: