J3_8VVT_029

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

C(JMH)AG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: JMH, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVT_029 not in the Motif Atlas

Geometric match to J3_8P9A_076

Geometric discrepancy: 0.1832

The information below is about J3_8P9A_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8VVT|1|ZA|C|1218
8VVT|1|ZA|JMH|1219
8VVT|1|ZA|A|1220
8VVT|1|ZA|G|1221
*
8VVT|1|ZA|C|1645
8VVT|1|ZA|C|1646
8VVT|1|ZA|A|1647
8VVT|1|ZA|G|1648
8VVT|1|ZA|U|1649
8VVT|1|ZA|A|1650
8VVT|1|ZA|A|1651
*
8VVT|1|ZA|U|1673
8VVT|1|ZA|G|1674
8VVT|1|ZA|A|1675
8VVT|1|ZA|U|1676
8VVT|1|ZA|U|1677
8VVT|1|ZA|A2M|1678
8VVT|1|ZA|A|1679
8VVT|1|ZA|G|1680

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain CC

S28

Chain FB

S5

Chain QB

S16