J3_8VVT_036

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

8VVT|1|ZA|U|1535, 8VVT|1|ZA|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVT_036 not in the Motif Atlas

Geometric match to J3_8CRE_086

Geometric discrepancy: 0.1667

The information below is about J3_8CRE_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8VVT|1|ZA|C|1532
8VVT|1|ZA|A|1533
8VVT|1|ZA|C|1534
8VVT|1|ZA|U|1535
8VVT|1|ZA|G|1536
*
8VVT|1|ZA|C|1597
8VVT|1|ZA|G|1598
8VVT|1|ZA|U|1599
8VVT|1|ZA|G|1600
8VVT|1|ZA|A|1601
8VVT|1|ZA|U|1602
8VVT|1|ZA|G|1603
8VVT|1|ZA|G|1604
*
8VVT|1|ZA|C|1635
8VVT|1|ZA|G|1636
8VVT|1|ZA|A|1637
8VVT|1|ZA|G|1638

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain FB

S5

Chain SB

uS13

Chain TB

eS19

Chain ZB

eS25