J3_8VVU_029

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

8VVU|1|ZA|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVU_029 not in the Motif Atlas

Geometric match to J3_8P9A_074

Geometric discrepancy: 0.1206

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23895.1

Basepair signature

cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VVU|1|ZA|A|938
8VVU|1|ZA|U|939
8VVU|1|ZA|U|940
8VVU|1|ZA|C|941
*
8VVU|1|ZA|G|985
8VVU|1|ZA|G|986
8VVU|1|ZA|A|987
8VVU|1|ZA|C|988
8VVU|1|ZA|C|989
8VVU|1|ZA|A|990
8VVU|1|ZA|G|991
8VVU|1|ZA|A|992
8VVU|1|ZA|G|993
*
8VVU|1|ZA|C|1000
8VVU|1|ZA|A|1001
8VVU|1|ZA|U|1002
8VVU|1|ZA|U|1003
8VVU|1|ZA|U|1004

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

S26

Chain BB

S3A

Chain OA

eL43

Chain OB

S14