J3_8VVV_008
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGA(A2M)CUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8VVV|1|5|A2M|1540, 8VVV|1|5|G|1647, 8VVV|1|5|A|1648
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVV_008 not in the Motif Atlas
- Geometric match to J3_8P9A_049
- Geometric discrepancy: 0.0779
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8VVV|1|5|U|1537
8VVV|1|5|G|1538
8VVV|1|5|A|1539
8VVV|1|5|A2M|1540
8VVV|1|5|C|1541
8VVV|1|5|U|1542
8VVV|1|5|A|1543
*
8VVV|1|5|U|1628
8VVV|1|5|A|1629
8VVV|1|5|G|1630
*
8VVV|1|5|C|1646
8VVV|1|5|G|1647
8VVV|1|5|A|1648
8VVV|1|5|A|1649
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain N
- eL15
- Chain j
- eL37
- Chain l
- eL39
Coloring options: