J3_8VVV_034

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

C(JMH)AG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: JMH, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVV_034 not in the Motif Atlas

Geometric match to J3_8CRE_078

Geometric discrepancy: 0.1864

The information below is about J3_8CRE_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8VVV|1|9|C|1218
8VVV|1|9|JMH|1219
8VVV|1|9|A|1220
8VVV|1|9|G|1221
*
8VVV|1|9|C|1645
8VVV|1|9|C|1646
8VVV|1|9|A|1647
8VVV|1|9|G|1648
8VVV|1|9|U|1649
8VVV|1|9|A|1650
8VVV|1|9|A|1651
*
8VVV|1|9|U|1673
8VVV|1|9|G|1674
8VVV|1|9|A|1675
8VVV|1|9|U|1676
8VVV|1|9|U|1677
8VVV|1|9|A2M|1678
8VVV|1|9|A|1679
8VVV|1|9|G|1680

Current chains

Chain 9

18S rRNA

Nearby chains

Chain FF

uS7

Chain QQ

uS9

Chain cc

eS28