J3_8WHY_005

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8WHY|1|A|A|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WHY_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.0804

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8WHY|1|A|C|1421
8WHY|1|A|A|1422
8WHY|1|A|A|1423
8WHY|1|A|G|1424
*
8WHY|1|A|C|1823
8WHY|1|A|C|1824
8WHY|1|A|C|1825
8WHY|1|A|A|1826
8WHY|1|A|A|1827
8WHY|1|A|A|1828
8WHY|1|A|C|1829
*
8WHY|1|A|G|1838
8WHY|1|A|U|1839
8WHY|1|A|G|1840

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34