J3_8WV1_004
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 8WV1|1|A|U|288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WV1_004 not in the Motif Atlas
- Homologous match to J3_4WF9_022
- Geometric discrepancy: 0.2163
- The information below is about J3_4WF9_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97971.2
- Basepair signature
- cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8WV1|1|A|U|258
8WV1|1|A|A|259
8WV1|1|A|A|260
8WV1|1|A|A|261
8WV1|1|A|C|262
*
8WV1|1|A|G|282
8WV1|1|A|G|283
8WV1|1|A|G|284
8WV1|1|A|U|285
8WV1|1|A|C|286
8WV1|1|A|G|287
8WV1|1|A|U|288
8WV1|1|A|G|289
*
8WV1|1|A|C|396
8WV1|1|A|G|397
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain H
- Large ribosomal subunit protein bL9
- Chain W
- Large ribosomal subunit protein bL28
Coloring options: