J3_8WV1_031

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WV1_031 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1565

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8WV1|1|a|G|1470
8WV1|1|a|G|1471
8WV1|1|a|G|1472
8WV1|1|a|A|1473
8WV1|1|a|C|1474
8WV1|1|a|G|1475
*
8WV1|1|a|C|1611
8WV1|1|a|C|1612
*
8WV1|1|a|G|1615
8WV1|1|a|A|1616
8WV1|1|a|A|1617
8WV1|1|a|A|1618
8WV1|1|a|A|1619
8WV1|1|a|G|1620
8WV1|1|a|C|1621

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2