J3_8WV1_037
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 8WV1|1|A|U|529, 8WV1|1|A|G|533, 8WV1|1|A|C|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WV1_037 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1441
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8WV1|1|A|G|30
8WV1|1|A|C|31
*
8WV1|1|A|G|500
8WV1|1|A|U|501
8WV1|1|A|G|502
8WV1|1|A|A|503
8WV1|1|A|A|504
8WV1|1|A|A|505
8WV1|1|A|A|506
8WV1|1|A|G|507
8WV1|1|A|A|508
8WV1|1|A|A|509
8WV1|1|A|C|510
*
8WV1|1|A|G|521
8WV1|1|A|A|522
8WV1|1|A|G|523
8WV1|1|A|U|524
8WV1|1|A|G|525
8WV1|1|A|A|526
8WV1|1|A|A|527
8WV1|1|A|A|528
8WV1|1|A|U|529
8WV1|1|A|A|530
8WV1|1|A|G|531
8WV1|1|A|A|532
8WV1|1|A|G|533
8WV1|1|A|C|534
8WV1|1|A|C|535
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain P
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L22
- Chain S
- 50S ribosomal protein L23
- Chain T
- Large ribosomal subunit protein uL24
Coloring options: