J3_8WV1_042
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8WV1|1|a|U|474, 8WV1|1|a|C|482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WV1_042 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1307
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8WV1|1|a|C|32
8WV1|1|a|U|33
8WV1|1|a|C|34
8WV1|1|a|G|35
*
8WV1|1|a|C|471
8WV1|1|a|G|472
8WV1|1|a|A|473
8WV1|1|a|U|474
8WV1|1|a|A|475
8WV1|1|a|G|476
8WV1|1|a|C|477
8WV1|1|a|G|478
8WV1|1|a|C|479
8WV1|1|a|A|480
8WV1|1|a|C|481
8WV1|1|a|C|482
8WV1|1|a|A|483
8WV1|1|a|G|484
8WV1|1|a|U|485
8WV1|1|a|A|486
8WV1|1|a|C|487
*
8WV1|1|a|G|494
8WV1|1|a|G|495
8WV1|1|a|A|496
8WV1|1|a|A|497
8WV1|1|a|A|498
8WV1|1|a|G|499
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 7
- 50S ribosomal protein L34
- Chain e
- 50S ribosomal protein L4
- Chain p
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L22
- Chain s
- 50S ribosomal protein L23
Coloring options: