J3_8Y5P_009

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

8Y5P|1|1|A|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y5P_009 not in the Motif Atlas

Geometric match to J3_5J7L_041

Geometric discrepancy: 0.2166

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8Y5P|1|1|C|1298
8Y5P|1|1|G|1299
8Y5P|1|1|G|1300
8Y5P|1|1|A|1301
8Y5P|1|1|A|1302
8Y5P|1|1|G|1303
*
8Y5P|1|1|C|1625
8Y5P|1|1|A|1626
8Y5P|1|1|G|1627
*
8Y5P|1|1|C|1639
8Y5P|1|1|A|1640
8Y5P|1|1|A|1641
8Y5P|1|1|G|1642

Current chains

Chain 1

23S rRNA

Nearby chains