J3_8Y5P_012

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y5P_012 not in the Motif Atlas

Geometric match to J3_5J7L_069

Geometric discrepancy: 0.166

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8Y5P|1|1|G|1424
8Y5P|1|1|G|1425
8Y5P|1|1|G|1426
8Y5P|1|1|A|1427
8Y5P|1|1|C|1428
8Y5P|1|1|G|1429
*
8Y5P|1|1|C|1564
8Y5P|1|1|C|1565
*
8Y5P|1|1|G|1568
8Y5P|1|1|A|1569
8Y5P|1|1|A|1570
8Y5P|1|1|A|1571
8Y5P|1|1|A|1572
8Y5P|1|1|G|1573
8Y5P|1|1|C|1574

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2