J3_8YDG_006
3D structure
- PDB id
- 8YDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 8YDG|1|1|U|686, 8YDG|1|1|A|792, 8YDG|1|1|A|793
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDG_006 not in the Motif Atlas
- Geometric match to J3_8B0X_016
- Geometric discrepancy: 0.2147
- The information below is about J3_8B0X_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8YDG|1|1|U|683
8YDG|1|1|G|684
8YDG|1|1|A|685
8YDG|1|1|U|686
8YDG|1|1|C|687
8YDG|1|1|U|688
8YDG|1|1|A|689
*
8YDG|1|1|U|773
8YDG|1|1|G|774
8YDG|1|1|G|775
*
8YDG|1|1|C|791
8YDG|1|1|A|792
8YDG|1|1|A|793
8YDG|1|1|A|794
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
- Chain b
- 50S ribosomal protein L2
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