J3_8YDG_028
3D structure
- PDB id
- 8YDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 8YDG|1|3|U|1212, 8YDG|1|3|C|1214
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDG_028 not in the Motif Atlas
- Geometric match to J3_4LFB_016
- Geometric discrepancy: 0.2322
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28881.1
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YDG|1|3|C|990
8YDG|1|3|U|991
8YDG|1|3|U|992
8YDG|1|3|G|993
8YDG|1|3|A|994
8YDG|1|3|C|995
8YDG|1|3|A|996
8YDG|1|3|U|997
*
8YDG|1|3|A|1044
8YDG|1|3|C|1045
8YDG|1|3|A|1046
8YDG|1|3|G|1047
*
8YDG|1|3|C|1210
8YDG|1|3|U|1211
8YDG|1|3|U|1212
8YDG|1|3|A|1213
8YDG|1|3|C|1214
8YDG|1|3|G|1215
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 0
- Elongation factor G
- Chain S
- 30S ribosomal protein S14
Coloring options: