J3_8YDH_016

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8YDH|1|1|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDH|1|1|C|2517
8YDH|1|1|A|2518
8YDH|1|1|U|2519
8YDH|1|1|C|2520
*
8YDH|1|1|G|2545
8YDH|1|1|U|2546
8YDH|1|1|A|2547
*
8YDH|1|1|U|2561
8YDH|1|1|U|2562
8YDH|1|1|U|2563
8YDH|1|1|A|2564
8YDH|1|1|A|2565
8YDH|1|1|A|2566
8YDH|1|1|G|2567

Current chains

Chain 1

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain k

50S ribosomal protein L14