J3_8YDH_030
3D structure
- PDB id
- 8YDH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.55 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 8YDH|1|3|U|1212, 8YDH|1|3|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDH_030 not in the Motif Atlas
- Geometric match to J3_8B0X_029
- Geometric discrepancy: 0.1402
- The information below is about J3_8B0X_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28881.1
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YDH|1|3|C|990
8YDH|1|3|U|991
8YDH|1|3|U|992
8YDH|1|3|G|993
8YDH|1|3|A|994
8YDH|1|3|C|995
8YDH|1|3|A|996
8YDH|1|3|U|997
*
8YDH|1|3|A|1044
8YDH|1|3|C|1045
8YDH|1|3|A|1046
8YDH|1|3|G|1047
*
8YDH|1|3|C|1210
8YDH|1|3|U|1211
8YDH|1|3|U|1212
8YDH|1|3|A|1213
8YDH|1|3|C|1214
8YDH|1|3|G|1215
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain S
- 30S ribosomal protein S14
Coloring options: