3D structure

PDB id
8YLR (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UGA*UAAUAG*CAUUA
Length
14 nucleotides
Bulged bases
8YLR|1|2|U|864
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8YLR_004 not in the Motif Atlas
Homologous match to J3_8C3A_034
Geometric discrepancy: 0.2574
The information below is about J3_8C3A_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.2
Basepair signature
cWW-tSH-cWW-tHW-cWW-cWW-F
Number of instances in this motif group
7

Unit IDs

8YLR|1|2|U|633
8YLR|1|2|G|634
8YLR|1|2|A|635
*
8YLR|1|2|U|861
8YLR|1|2|A|862
8YLR|1|2|A|863
8YLR|1|2|U|864
8YLR|1|2|A|865
8YLR|1|2|G|866
*
8YLR|1|2|C|962
8YLR|1|2|A|963
8YLR|1|2|U|964
8YLR|1|2|U|965
8YLR|1|2|A|966

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SU
Small ribosomal subunit protein eS7A
Chain SX
Small ribosomal subunit protein uS17A
Chain SY
Small ribosomal subunit protein uS15
Chain Sb
Small ribosomal subunit protein uS8A
Chain Sc
Small ribosomal subunit protein uS12A
Chain Sf
Small ribosomal subunit protein eS27A

Coloring options:


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