J3_8YLR_006

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

8YLR|1|2|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YLR_006 not in the Motif Atlas

Homologous match to J3_8P9A_074

Geometric discrepancy: 0.1557

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23895.1

Basepair signature

cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8YLR|1|2|A|881
8YLR|1|2|U|882
8YLR|1|2|C|883
8YLR|1|2|A|884
*
8YLR|1|2|U|928
8YLR|1|2|A|929
8YLR|1|2|A|930
8YLR|1|2|C|931
8YLR|1|2|U|932
8YLR|1|2|A|933
8YLR|1|2|C|934
8YLR|1|2|U|935
8YLR|1|2|G|936
*
8YLR|1|2|C|943
8YLR|1|2|A|944
8YLR|1|2|U|945
8YLR|1|2|U|946
8YLR|1|2|U|947

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein eS1A

Chain SY

Small ribosomal subunit protein uS15

Chain SZ

Small ribosomal subunit protein uS11B

Chain Se

Small ribosomal subunit protein eS26A

Chain r

Large ribosomal subunit protein eL43A