J3_8ZDC_008
3D structure
- PDB id
- 8ZDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 8ZDC|1|2|G|1274, 8ZDC|1|2|G|1507, 8ZDC|1|2|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZDC_008 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1993
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8ZDC|1|2|C|1272
8ZDC|1|2|C|1273
8ZDC|1|2|G|1274
8ZDC|1|2|G|1275
8ZDC|1|2|A|1276
8ZDC|1|2|C|1277
*
8ZDC|1|2|G|1320
8ZDC|1|2|G|1321
8ZDC|1|2|G|1322
8ZDC|1|2|U|1323
8ZDC|1|2|G|1324
*
8ZDC|1|2|U|1504
8ZDC|1|2|U|1505
8ZDC|1|2|A|1506
8ZDC|1|2|G|1507
8ZDC|1|2|A|1508
8ZDC|1|2|U|1509
8ZDC|1|2|G|1510
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain K
- Small ribosomal subunit protein eS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
Coloring options: