J3_8ZEJ_027

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8ZEJ|1|b|A|1609, 8ZEJ|1|b|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZEJ_027 not in the Motif Atlas

Geometric match to J3_7A0S_007

Geometric discrepancy: 0.1306

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8ZEJ|1|b|C|1306
8ZEJ|1|b|A|1307
8ZEJ|1|b|A|1308
8ZEJ|1|b|G|1309
*
8ZEJ|1|b|C|1605
8ZEJ|1|b|C|1606
8ZEJ|1|b|C|1607
8ZEJ|1|b|A|1608
8ZEJ|1|b|A|1609
8ZEJ|1|b|A|1610
8ZEJ|1|b|C|1611
*
8ZEJ|1|b|G|1620
8ZEJ|1|b|U|1621
8ZEJ|1|b|G|1622

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34