J3_8ZGR_012

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8ZGR|1|LA|A|1481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZGR_012 not in the Motif Atlas

Homologous match to J3_8CRE_013

Geometric discrepancy: 0.1611

The information below is about J3_8CRE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8ZGR|1|LA|U|1478
8ZGR|1|LA|G|1479
8ZGR|1|LA|A|1480
8ZGR|1|LA|A|1481
8ZGR|1|LA|G|1482
8ZGR|1|LA|U|1483
8ZGR|1|LA|G|1484
*
8ZGR|1|LA|C|1856
8ZGR|1|LA|A|1857
8ZGR|1|LA|A|1858
*
8ZGR|1|LA|U|1870
8ZGR|1|LA|C|1871
8ZGR|1|LA|U|1872
8ZGR|1|LA|A|1873

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain Li

Large ribosomal subunit protein eL34A